Package 'ascii'

Title: Export R Objects to Several Markup Languages
Description: Coerce R object to 'asciidoc', 'txt2tags', 'restructuredText', 'org', 'textile' or 'pandoc' syntax. Package comes with a set of drivers for 'Sweave'.
Authors: David Hajage [aut], Mark Clements [cre, ctb], Seth Falcon [ctb], Terry Therneau [ctb], Matti Pastell [ctb], Friedrich Leisch [ctb]
Maintainer: Mark Clements <[email protected]>
License: GPL (>= 2)
Version: 2.6
Built: 2024-10-18 04:15:24 UTC
Source: https://github.com/mclements/ascii

Help Index


Export R objects to several markup languages

Description

Convert an R object to an ascii object, which can then be printed with asciidoc, txt2tags, reStructuredText, org, textile or pandoc syntax.

Usage

## S3 method for class 'anova'
ascii(
  x,
  include.rownames = TRUE,
  include.colnames = TRUE,
  rownames = NULL,
  colnames = NULL,
  format = "f",
  digits = 2,
  decimal.mark = ".",
  na.print = "",
  caption = NULL,
  caption.level = NULL,
  width = 0,
  frame = NULL,
  grid = NULL,
  valign = NULL,
  header = TRUE,
  footer = FALSE,
  align = NULL,
  col.width = 1,
  style = NULL,
  tgroup = NULL,
  n.tgroup = NULL,
  talign = "c",
  tvalign = "middle",
  tstyle = "h",
  bgroup = NULL,
  n.bgroup = NULL,
  balign = "c",
  bvalign = "middle",
  bstyle = "h",
  lgroup = NULL,
  n.lgroup = NULL,
  lalign = "c",
  lvalign = "middle",
  lstyle = "h",
  rgroup = NULL,
  n.rgroup = NULL,
  ralign = "c",
  rvalign = "middle",
  rstyle = "h",
  ...
)

## S3 method for class 'data.frame'
ascii(
  x,
  include.rownames = TRUE,
  include.colnames = TRUE,
  rownames = NULL,
  colnames = NULL,
  format = "f",
  digits = 2,
  decimal.mark = ".",
  na.print = "",
  caption = NULL,
  caption.level = NULL,
  width = 0,
  frame = NULL,
  grid = NULL,
  valign = NULL,
  header = TRUE,
  footer = FALSE,
  align = NULL,
  col.width = 1,
  style = NULL,
  tgroup = NULL,
  n.tgroup = NULL,
  talign = "c",
  tvalign = "middle",
  tstyle = "h",
  bgroup = NULL,
  n.bgroup = NULL,
  balign = "c",
  bvalign = "middle",
  bstyle = "h",
  lgroup = NULL,
  n.lgroup = NULL,
  lalign = "c",
  lvalign = "middle",
  lstyle = "h",
  rgroup = NULL,
  n.rgroup = NULL,
  ralign = "c",
  rvalign = "middle",
  rstyle = "h",
  ...
)

## Default S3 method:
ascii(
  x,
  include.rownames = TRUE,
  include.colnames = TRUE,
  rownames = NULL,
  colnames = NULL,
  format = "f",
  digits = 2,
  decimal.mark = ".",
  na.print = "",
  caption = NULL,
  caption.level = NULL,
  width = 0,
  frame = NULL,
  grid = NULL,
  valign = NULL,
  header = TRUE,
  footer = FALSE,
  align = NULL,
  col.width = 1,
  style = NULL,
  tgroup = NULL,
  n.tgroup = NULL,
  talign = "c",
  tvalign = "middle",
  tstyle = "h",
  bgroup = NULL,
  n.bgroup = NULL,
  balign = "c",
  bvalign = "middle",
  bstyle = "h",
  lgroup = NULL,
  n.lgroup = NULL,
  lalign = "c",
  lvalign = "middle",
  lstyle = "h",
  rgroup = NULL,
  n.rgroup = NULL,
  ralign = "c",
  rvalign = "middle",
  rstyle = "h",
  list.type = "bullet",
  ...
)

## S3 method for class 'glm'
ascii(
  x,
  include.rownames = TRUE,
  include.colnames = TRUE,
  rownames = NULL,
  colnames = NULL,
  format = "f",
  digits = 2,
  decimal.mark = ".",
  na.print = "",
  caption = NULL,
  caption.level = NULL,
  width = 0,
  frame = NULL,
  grid = NULL,
  valign = NULL,
  header = TRUE,
  footer = FALSE,
  align = NULL,
  col.width = 1,
  style = NULL,
  tgroup = NULL,
  n.tgroup = NULL,
  talign = "c",
  tvalign = "middle",
  tstyle = "h",
  bgroup = NULL,
  n.bgroup = NULL,
  balign = "c",
  bvalign = "middle",
  bstyle = "h",
  lgroup = NULL,
  n.lgroup = NULL,
  lalign = "c",
  lvalign = "middle",
  lstyle = "h",
  rgroup = NULL,
  n.rgroup = NULL,
  ralign = "c",
  rvalign = "middle",
  rstyle = "h",
  ...
)

## S3 method for class 'summary.glm'
ascii(
  x,
  include.rownames = TRUE,
  include.colnames = TRUE,
  rownames = NULL,
  colnames = NULL,
  format = "f",
  digits = 2,
  decimal.mark = ".",
  na.print = "",
  caption = NULL,
  caption.level = NULL,
  width = 0,
  frame = NULL,
  grid = NULL,
  valign = NULL,
  header = TRUE,
  footer = FALSE,
  align = NULL,
  col.width = 1,
  style = NULL,
  tgroup = NULL,
  n.tgroup = NULL,
  talign = "c",
  tvalign = "middle",
  tstyle = "h",
  bgroup = NULL,
  n.bgroup = NULL,
  balign = "c",
  bvalign = "middle",
  bstyle = "h",
  lgroup = NULL,
  n.lgroup = NULL,
  lalign = "c",
  lvalign = "middle",
  lstyle = "h",
  rgroup = NULL,
  n.rgroup = NULL,
  ralign = "c",
  rvalign = "middle",
  rstyle = "h",
  ...
)

## S3 method for class 'describe'
ascii(x, condense = TRUE, ...)

## S3 method for class 'summary.formula.response'
ascii(
  x,
  vnames = c("labels", "names"),
  prUnits = TRUE,
  lgroup = list(dimnames(stats)[[1]], if (ul) vlabels else at$vname[at$vname != ""]),
  n.lgroup = list(1, at$nlevels),
  include.rownames = FALSE,
  include.colnames = TRUE,
  format = "nice",
  caption = paste(at$ylabel, if (ns > 1) paste(" by", if (ul) at$strat.label else
    at$strat.name), " N = ", at$n, if (at$nmiss) paste(", ", at$nmiss, " Missing", sep =
    ""), sep = ""),
  caption.level = "s",
  header = TRUE,
  ...
)

## S3 method for class 'summary.formula.reverse'
ascii(
  x,
  digits,
  prn = any(n != N),
  pctdig = 0,
  npct = c("numerator", "both", "denominator", "none"),
  exclude1 = TRUE,
  vnames = c("labels", "names"),
  prUnits = TRUE,
  sep = "/",
  formatArgs = NULL,
  round = NULL,
  prtest = c("P", "stat", "df", "name"),
  prmsd = FALSE,
  pdig = 3,
  eps = 0.001,
  caption = paste("Descriptive Statistics", if (length(x$group.label)) paste(" by",
    x$group.label) else paste(" (N = ", x$N, ")", sep = ""), sep = ""),
  caption.level = "s",
  include.rownames = FALSE,
  include.colnames = TRUE,
  colnames = gl,
  header = TRUE,
  lgroup = lgr,
  n.lgroup = n.lgr,
  rgroup = rgr,
  n.rgroup = n.rgr,
  rstyle = "d",
  ...
)

## S3 method for class 'summary.formula.cross'
ascii(
  x,
  twoway = nvar == 2,
  prnmiss = any(stats$Missing > 0),
  prn = TRUE,
  formatArgs = NULL,
  caption = a$heading,
  caption.level = "s",
  include.rownames = FALSE,
  include.colnames = TRUE,
  header = TRUE,
  format = "nice",
  lgroup = v,
  n.lgroup = rep(length(z), length(v)),
  ...
)

## S3 method for class 'htest'
ascii(
  x,
  include.rownames = TRUE,
  include.colnames = TRUE,
  rownames = NULL,
  colnames = NULL,
  format = "f",
  digits = 2,
  decimal.mark = ".",
  na.print = "",
  caption = NULL,
  caption.level = NULL,
  width = 0,
  frame = NULL,
  grid = NULL,
  valign = NULL,
  header = TRUE,
  footer = FALSE,
  align = NULL,
  col.width = 1,
  style = NULL,
  tgroup = NULL,
  n.tgroup = NULL,
  talign = "c",
  tvalign = "middle",
  tstyle = "h",
  bgroup = NULL,
  n.bgroup = NULL,
  balign = "c",
  bvalign = "middle",
  bstyle = "h",
  lgroup = NULL,
  n.lgroup = NULL,
  lalign = "c",
  lvalign = "middle",
  lstyle = "h",
  rgroup = NULL,
  n.rgroup = NULL,
  ralign = "c",
  rvalign = "middle",
  rstyle = "h",
  ...
)

## S3 method for class 'list'
ascii(x, caption = NULL, caption.level = NULL, list.type = "bullet", ...)

## S3 method for class 'packageDescription'
ascii(x, caption = NULL, caption.level = NULL, list.type = "label", ...)

## S3 method for class 'sessionInfo'
ascii(x, locale = TRUE, ...)

## S3 method for class 'lm'
ascii(
  x,
  include.rownames = TRUE,
  include.colnames = TRUE,
  rownames = NULL,
  colnames = NULL,
  format = "f",
  digits = 2,
  decimal.mark = ".",
  na.print = "",
  caption = NULL,
  caption.level = NULL,
  width = 0,
  frame = NULL,
  grid = NULL,
  valign = NULL,
  header = TRUE,
  footer = FALSE,
  align = NULL,
  col.width = 1,
  style = NULL,
  tgroup = NULL,
  n.tgroup = NULL,
  talign = "c",
  tvalign = "middle",
  tstyle = "h",
  bgroup = NULL,
  n.bgroup = NULL,
  balign = "c",
  bvalign = "middle",
  bstyle = "h",
  lgroup = NULL,
  n.lgroup = NULL,
  lalign = "c",
  lvalign = "middle",
  lstyle = "h",
  rgroup = NULL,
  n.rgroup = NULL,
  ralign = "c",
  rvalign = "middle",
  rstyle = "h",
  ...
)

## S3 method for class 'summary.lm'
ascii(
  x,
  include.rownames = TRUE,
  include.colnames = TRUE,
  rownames = NULL,
  colnames = NULL,
  format = "f",
  digits = 2,
  decimal.mark = ".",
  na.print = "",
  caption = NULL,
  caption.level = NULL,
  width = 0,
  frame = NULL,
  grid = NULL,
  valign = NULL,
  header = TRUE,
  footer = FALSE,
  align = NULL,
  col.width = 1,
  style = NULL,
  tgroup = NULL,
  n.tgroup = NULL,
  talign = "c",
  tvalign = "middle",
  tstyle = "h",
  bgroup = NULL,
  n.bgroup = NULL,
  balign = "c",
  bvalign = "middle",
  bstyle = "h",
  lgroup = NULL,
  n.lgroup = NULL,
  lalign = "c",
  lvalign = "middle",
  lstyle = "h",
  rgroup = NULL,
  n.rgroup = NULL,
  ralign = "c",
  rvalign = "middle",
  rstyle = "h",
  ...
)

## S3 method for class 'matrix'
ascii(
  x,
  include.rownames = FALSE,
  include.colnames = FALSE,
  rownames = NULL,
  colnames = NULL,
  format = "f",
  digits = 2,
  decimal.mark = ".",
  na.print = "",
  caption = NULL,
  caption.level = NULL,
  width = 0,
  frame = NULL,
  grid = NULL,
  valign = NULL,
  header = FALSE,
  footer = FALSE,
  align = NULL,
  col.width = 1,
  style = NULL,
  tgroup = NULL,
  n.tgroup = NULL,
  talign = "c",
  tvalign = "middle",
  tstyle = "h",
  bgroup = NULL,
  n.bgroup = NULL,
  balign = "c",
  bvalign = "middle",
  bstyle = "h",
  lgroup = NULL,
  n.lgroup = NULL,
  lalign = "c",
  lvalign = "middle",
  lstyle = "h",
  rgroup = NULL,
  n.rgroup = NULL,
  ralign = "c",
  rvalign = "middle",
  rstyle = "h",
  ...
)

## S3 method for class 'survfit'
ascii(
  x,
  scale = 1,
  print.rmean = getOption("survfit.print.rmean"),
  rmean = getOption("survfit.rmean"),
  include.rownames = TRUE,
  include.colnames = TRUE,
  header = TRUE,
  ...
)

## S3 method for class 'table'
ascii(
  x,
  include.rownames = TRUE,
  include.colnames = TRUE,
  rownames = NULL,
  colnames = NULL,
  format = "f",
  digits = 2,
  decimal.mark = ".",
  na.print = "",
  caption = NULL,
  caption.level = NULL,
  width = 0,
  frame = NULL,
  grid = NULL,
  valign = NULL,
  header = TRUE,
  footer = FALSE,
  align = NULL,
  col.width = 1,
  style = NULL,
  tgroup = NULL,
  n.tgroup = NULL,
  talign = "c",
  tvalign = "middle",
  tstyle = "h",
  bgroup = NULL,
  n.bgroup = NULL,
  balign = "c",
  bvalign = "middle",
  bstyle = "h",
  lgroup = NULL,
  n.lgroup = NULL,
  lalign = "c",
  lvalign = "middle",
  lstyle = "h",
  rgroup = NULL,
  n.rgroup = NULL,
  ralign = "c",
  rvalign = "middle",
  rstyle = "h",
  ...
)

## S3 method for class 'integer'
ascii(
  x,
  include.rownames = FALSE,
  include.colnames = FALSE,
  rownames = NULL,
  colnames = NULL,
  format = "f",
  digits = 2,
  decimal.mark = ".",
  na.print = "",
  caption = NULL,
  caption.level = NULL,
  width = 0,
  frame = NULL,
  grid = NULL,
  valign = NULL,
  header = FALSE,
  footer = FALSE,
  align = NULL,
  col.width = 1,
  style = NULL,
  tgroup = NULL,
  n.tgroup = NULL,
  talign = "c",
  tvalign = "middle",
  tstyle = "h",
  bgroup = NULL,
  n.bgroup = NULL,
  balign = "c",
  bvalign = "middle",
  bstyle = "h",
  lgroup = NULL,
  n.lgroup = NULL,
  lalign = "c",
  lvalign = "middle",
  lstyle = "h",
  rgroup = NULL,
  n.rgroup = NULL,
  ralign = "c",
  rvalign = "middle",
  rstyle = "h",
  ...
)

## S3 method for class 'numeric'
ascii(
  x,
  include.rownames = FALSE,
  include.colnames = FALSE,
  rownames = NULL,
  colnames = NULL,
  format = "f",
  digits = 2,
  decimal.mark = ".",
  na.print = "",
  caption = NULL,
  caption.level = NULL,
  width = 0,
  frame = NULL,
  grid = NULL,
  valign = NULL,
  header = FALSE,
  footer = FALSE,
  align = NULL,
  col.width = 1,
  style = NULL,
  tgroup = NULL,
  n.tgroup = NULL,
  talign = "c",
  tvalign = "middle",
  tstyle = "h",
  bgroup = NULL,
  n.bgroup = NULL,
  balign = "c",
  bvalign = "middle",
  bstyle = "h",
  lgroup = NULL,
  n.lgroup = NULL,
  lalign = "c",
  lvalign = "middle",
  lstyle = "h",
  rgroup = NULL,
  n.rgroup = NULL,
  ralign = "c",
  rvalign = "middle",
  rstyle = "h",
  ...
)

## S3 method for class 'character'
ascii(
  x,
  include.rownames = FALSE,
  include.colnames = FALSE,
  rownames = NULL,
  colnames = NULL,
  format = "f",
  digits = 2,
  decimal.mark = ".",
  na.print = "",
  caption = NULL,
  caption.level = NULL,
  width = 0,
  frame = NULL,
  grid = NULL,
  valign = NULL,
  header = FALSE,
  footer = FALSE,
  align = NULL,
  col.width = 1,
  style = NULL,
  tgroup = NULL,
  n.tgroup = NULL,
  talign = "c",
  tvalign = "middle",
  tstyle = "h",
  bgroup = NULL,
  n.bgroup = NULL,
  balign = "c",
  bvalign = "middle",
  bstyle = "h",
  lgroup = NULL,
  n.lgroup = NULL,
  lalign = "c",
  lvalign = "middle",
  lstyle = "h",
  rgroup = NULL,
  n.rgroup = NULL,
  ralign = "c",
  rvalign = "middle",
  rstyle = "h",
  ...
)

## S3 method for class 'factor'
ascii(
  x,
  include.rownames = FALSE,
  include.colnames = FALSE,
  rownames = NULL,
  colnames = NULL,
  format = "f",
  digits = 2,
  decimal.mark = ".",
  na.print = "",
  caption = NULL,
  caption.level = NULL,
  width = 0,
  frame = NULL,
  grid = NULL,
  valign = NULL,
  header = FALSE,
  footer = FALSE,
  align = NULL,
  col.width = 1,
  style = NULL,
  tgroup = NULL,
  n.tgroup = NULL,
  talign = "c",
  tvalign = "middle",
  tstyle = "h",
  bgroup = NULL,
  n.bgroup = NULL,
  balign = "c",
  bvalign = "middle",
  bstyle = "h",
  lgroup = NULL,
  n.lgroup = NULL,
  lalign = "c",
  lvalign = "middle",
  lstyle = "h",
  rgroup = NULL,
  n.rgroup = NULL,
  ralign = "c",
  rvalign = "middle",
  rstyle = "h",
  ...
)

## S3 method for class 'proc_time'
ascii(x, include.rownames = FALSE, include.colnames = TRUE, ...)

ascii(x, ...)

Arguments

x

An R object of class found among methods(ascii). If x is a list, it should be a list of character strings (it will produce a bulleted list output by default).

include.rownames

logical. If TRUE the rows names are printed. Default value depends of class of x.

include.colnames

logical. If TRUE the columns names are printed. Default value depends of class of x.

rownames

Character vector (replicated or truncated as necessary) indicating rownames of the corresponding rows. If NULL (default) the row names are not modified

colnames

Character vector (replicated or truncated as necessary) indicating colnames of the corresponding columns. If NULL (default) the column names are not modified

format

Character vector or matrix indicating the format for the corresponding columns. These values are passed to the formatC function. Use "d" (for integers), "f", "e", "E", "g", "G", "fg" (for reals), or "s" (for strings). "f" gives numbers in the usual xxx.xxx format; "e" and "E" give n.ddde+nn or n.dddE+nn (scientific format); "g" and "G" put x[i] into scientific format only if it saves space to do so. "fg" uses fixed format as "f", but digits as number of significant digits. Note that this can lead to quite long result strings. Finaly, "nice" is like "f", but with 0 digits if x is an integer. Default depends on the class of x.

digits

Numeric vector of length equal to the number of columns of the resulting table (otherwise it will be replicated or truncated as necessary) indicating the number of digits to display in the corresponding columns. Default is 2.

decimal.mark

The character to be used to indicate the numeric decimal point. Default is ".".

na.print

The character string specifying how NA should be formatted specially. Default is "".

caption

Character vector of length 1 containing the table's caption or title. Set to "" to suppress the caption. Default value is NULL.

caption.level

Character or numeric vector of length 1 containing the caption's level. Can take the following values: 0 to 5, "." (block titles in asciidoc markup), "s" (strong), "e" (emphasis), "m" (monospaced) or "" (no markup). Default is NULL.

width

Numeric vector of length one containing the table width relative to the available width (expressed as a percentage value, 1... 99). Default is 0 (all available width).

frame

Character vector of length one. Defines the table border, and can take the following values: "topbot" (top and bottom), "all" (all sides), "none" and "sides" (left and right). The default value is NULL.

grid

Character vector of length one. Defines which ruler lines are drawn between table rows and columns, and can take the following values: "all", "rows", "cols" and "none". Default is NULL.

valign

Vector or matrix indicating vertical alignment of all cells in table. Can take the following values: "top", "bottom" and "middle". Default is "".

header

logical or numeric. If TRUE or 1, 2, ..., the first line(s) of the table is (are) emphasized. The default value depends of class of x.

footer

logical or numeric. If TRUE or 1, the last line(s) of the table is (are) emphasized. The default value depends of class of x.

align

Vector or matrix indicating the alignment of the corresponding columns. Can be composed with "r" (right), "l" (left) and "c" (center). Default value is NULL.

col.width

Numeric vector of length equal to the number of columns of the resulting table (otherwise it will be replicated or truncated as necessary) indicating width of the corresponding columns (integer proportional values). Default is 1.

style

Character vector or matrix indicating the style of the corresponding columns. Can be composed with "d" (default), "s" (strong), "e" (emphasis), "m" (monospaced), "h" (header) "a" (cells can contain any of the AsciiDoc elements that are allowed inside document), "l" (literal), "v" (verse; all line breaks are retained). Default is NULL.

tgroup

Character vector or a list of character vectors defining major top column headings. The default is to have none (NULL).

n.tgroup

A numeric vector or a list of numeric vectors containing the number of columns for which each element in tgroup is a heading. For example, specify tgroup=c("Major 1","Major 2"), n.tgroup=c(3,3) if "Major 1" is to span columns 1-3 and "Major 2" is to span columns 4-6.

talign

Character vector of length one defining alignment of major top column headings.

tvalign

Character vector of length one defining vertical alignment of major top column headings.

tstyle

Character vector of length one indicating the style of major top column headings

bgroup

Character vector or list of character vectors defining major bottom column headings. The default is to have none (NULL).

n.bgroup

A numeric vector containing the number of columns for which each element in bgroup is a heading.

balign

Character vector of length one defining alignment of major bottom column headings.

bvalign

Character vector of length one defining vertical alignment of major bottom column headings.

bstyle

Character vector of length one indicating the style of major bottom column headings

lgroup

Character vector or list of character vectors defining major left row headings. The default is to have none (NULL).

n.lgroup

A numeric vector containing the number of rows for which each element in lgroup is a heading. Column names count in the row numbers if include.colnames = TRUE.

lalign

Character vector of length one defining alignment of major left row headings.

lvalign

Character vector of length one defining vertical alignment of major left row headings.

lstyle

Character vector of length one indicating the style of major left row headings

rgroup

Character vector or list of character vectors defining major right row headings. The default is to have none (NULL).

n.rgroup

A numeric vector containing the number of rows for which each element in rgroup is a heading. Column names count in the row numbers if include.colnames = TRUE.

ralign

Character vector of length one defining alignment of major right row headings.

rvalign

Character vector of length one defining vertical alignment of major right row headings.

rstyle

Character vector of length one indicating the style of major right row headings

...

Additional arguments. (Currently ignored.)

list.type

Character vector of length one indicating the list type ("bullet", "number", "label" or "none"). If "label", names(list) is used for labels. Default is "bullet".

condense

default is TRUE to condense the output with regard to the 5 lowest and highest values and the frequency table (describe() in package Hmisc).

vnames

By default, tables and plots are usually labeled with variable labels (see summary.formula in package Hmisc).

prUnits

set to FALSE to suppress printing or latexing units attributes of variables (see summary.formula in package Hmisc).

prn

set to TRUE to print the number of non-missing observations on the current (row) variable (see summary.formula in package Hmisc).

pctdig

number of digits to the right of the decimal place for printing percentages (see summary.formula in package Hmisc).

npct

specifies which counts are to be printed to the right of percentages (see summary.formula in package Hmisc).

exclude1

by default, method="reverse" objects will be printed, plotted, or typeset by removing redundant entries from percentage tables for categorical variables (see summary.formula in package Hmisc).

sep

character to use to separate quantiles when printing method="reverse" tables (see summary.formula in package Hmisc).

formatArgs

a list containing other arguments to pass to format.default (see summary.formula in package Hmisc).

round

Specify round to round the quantiles and optional mean and standard deviation to round digits after the decimal point (see summary.formula in package Hmisc).

prtest

a vector of test statistic components to print if test=TRUE (see summary.formula in package Hmisc).

prmsd

set to TRUE to print mean and SD after the three quantiles, for continuous variables (see summary.formula in package Hmisc).

pdig

number of digits to the right of the decimal place for printing P-values. (see summary.formula in package Hmisc).

eps

P-values less than eps will be printed as < eps (see summary.formula in package Hmisc).

twoway

controls whether the resulting table will be printed in enumeration format or as a two-way table (the default) (see summary.formula in package Hmisc).

prnmiss

set to FALSE to suppress printing counts of missing values

locale

show locale information?

scale

A numeric value to rescale the survival time, e.g., if the input data to survfit were in days, scale=365 would scale the printout to years (see print.survfit() in package survival).

print.rmean

Option for computation and display of the restricted mean (see print.survfit() in package survival).

rmean

Option for computation and display of the restricted mean (see print.survfit() in package survival).

Details

The nature of the generated output depends on the class of x. For example, summary.table objects produce a bulleted list while data.frame objects produce a table of the entire data.frame.

Sometimes, arguments are not active, depending of the features implemented in the markup language generated. All arguments are active when asciidoc syntax is produced.

The available method functions for ascii are given by methods(ascii). Users can extend the list of available classes by writing methods for the generic function ascii. All method functions should return an object of class "ascii".

Value

This function returns an object of class "asciiTable", "asciiList" or "asciiMixed".

Author(s)

David Hajage [email protected]

Examples

op <- options(asciiType = "org")
local({x <- 1:10; y <- rnorm(length(x),1+x); ascii(anova(lm(y~x)))})
options(op)
op <- options(asciiType = "org")
ascii(data.frame(a = 1:3, b = 2), include.rownames = FALSE, digits = 0)
options(op)
op <- options(asciiType = "org")
local({x <- 1:10; y <- rnorm(length(x), 1+x); ascii(glm(y~x)) })
options(op)
op <- options(asciiType = "org")
local({x <- 1:10; y <- rnorm(length(x), 1+x); ascii(summary(glm(y~x))) })
options(op)
op <- options(asciiType = "org")
local({x <- rnorm(100); ascii(t.test(x))})
options(op)
op <- options(asciiType = "org")
ascii(list(a=1,b=2), list.type="label")
options(op)
op <- options(asciiType = "org")
ascii(sessionInfo())
options(op)
op <- options(asciiType = "org")
local({x <- 1:10; y <- rnorm(length(x), 1+x); ascii(lm(y~x)) })
options(op)
op <- options(asciiType = "org")
local({x <- 1:10; y <- rnorm(length(x), 1+x); ascii(summary(lm(y~x))) })
options(op)
op <- options(asciiType = "org")
ascii(matrix(1:4,2,2,FALSE,list(1:2,c("A","B"))), TRUE, TRUE, digits=0)
options(op)
op <- options(asciiType = "org")
ascii(table(rbinom(100,5,.3)), digits=0)
options(op)
op <- options(asciiType = "org")
ascii(c(a=1L,b=2L),FALSE,TRUE,digits=0)
options(op)
op <- options(asciiType = "org")
ascii(seq(0,1,length=11),digits=1)
options(op)
op <- options(asciiType = "org")
ascii(c(a="A",b="B"),FALSE,TRUE,header=TRUE)
options(op)
op <- options(asciiType = "org")
ascii(factor(c("A","B")),FALSE)
options(op)
op <- options(asciiType = "org")
ascii(system.time(sum(1:1e6)), header=TRUE)
options(op)
data(esoph)
ascii(esoph[1:10,])
tab <- table(esoph$agegp, esoph$alcgp)
ascii(tab)
print(ascii(tab), type = "t2t")
print(ascii(tab), type = "rest")
print(ascii(tab), type = "org")
ascii(summary(tab))

Ascii formatting for a microbenchmark

Description

The default implementation returns an asciiMixed object with the units for the first element.

Usage

## S3 method for class 'microbenchmark'
ascii(x, unit, order, signif, row.names = FALSE, caption = NULL, ...)

Arguments

x

an object of class 'microbenchmark'

unit

What unit to print the timings in. Default value taken from the option 'microbenchmark.unit'

order

If present, order results according to this column of the output.

signif

If present, limit the limit of significant digits shown.

row.names

Argument passed to ascii

caption

logical; if not NULL, then add caption with units specified; otherwise, add units as part of an asciiMixed object.

...

Other parameters to pass to ascii for the summary table

Value

ascii object


ascii table generator

Description

ascii table generator

Author(s)

David Hajage


Translation of the printCoefmat function for ascii

Description

Compared with printCoefmat, this drops the quote and right arguments, and adds include.rownames, include.colnames and header default arguments.

Usage

asciiCoefmat(
  x,
  digits = max(3L, getOption("digits") - 2L),
  signif.stars = getOption("show.signif.stars"),
  signif.legend = signif.stars,
  dig.tst = max(1L, min(5L, digits - 1L)),
  cs.ind = 1:k,
  tst.ind = k + 1,
  zap.ind = integer(),
  P.values = NULL,
  has.Pvalue = nc >= 4L && length(cn <- colnames(x)) && substr(cn[nc], 1L, 3L) %in%
    c("Pr(", "p-v"),
  eps.Pvalue = .Machine$double.eps,
  na.print = "NA",
  include.rownames = TRUE,
  include.colnames = TRUE,
  header = TRUE,
  ...
)

Arguments

x

coefficient summary table that is suitable for printCoefmat

digits

minimum number of significant digits to be used for most numbers.

signif.stars

locial; if 'TRUE', P-values are additionally encoded visually as 'significance stars' in order to help scanning of long coefficient tables. It defaults to the 'show.signif.stars' slot of 'options'.

signif.legend

logical; if 'TRUE', a legend for the 'significance stars' is printed provided 'signif.stars = TRUE'.

dig.tst

minimum number of significant digits for the test statistics, see 'tst.ind'.

cs.ind

indices (integer) of column numbers which are (like) *c*oefficients and *s*tandard errors to be formatted together.

tst.ind

indices (integer) of column numbers for test statistics.

zap.ind

indices (integer) of column numbers which should be formatted by zapsmall, i.e., by 'zapping' values close to 0.

P.values

logical or 'NULL'; if 'TRUE', the last column of 'x' is formatted by format.pval as P values. If 'P.values = NULL', the default, it is set to 'TRUE' only if 'options("show.coef.Pvalue")' is 'TRUE' _and_ 'x' has at least 4 columns _and_ the last column name of 'x' starts with '"Pr("'.

has.Pvalue

logical; if 'TRUE', the last column of 'x' contains P values; in that case, it is printed if and only if 'P.values' (above) is true.

eps.Pvalue

lower threshold for reporting p-values.

na.print

a character string to code NA values in printed output.

include.rownames

argument passed to ascii

include.colnames

argument passed to ascii

header

argument passed to ascii

...

other argments passed to ascii

Value

ascii object. This is character, rather than numeric.


Sweave wrappers

Description

Sweave wrappers

Usage

Asciidoc(
  file,
  driver = RweaveAsciidoc,
  syntax = SweaveSyntaxNoweb,
  encoding = "",
  ...
)

T2t(file, driver = RweaveT2t, syntax = SweaveSyntaxNoweb, encoding = "", ...)

ReST(file, driver = RweaveReST, syntax = SweaveSyntaxNoweb, encoding = "", ...)

Org(file, driver = RweaveOrg, syntax = SweaveSyntaxNoweb, encoding = "", ...)

Textile(
  file,
  driver = RweaveTextile,
  syntax = SweaveSyntaxNoweb,
  encoding = "",
  ...
)

Pandoc(
  file,
  driver = RweavePandoc,
  syntax = SweaveSyntaxNoweb,
  encoding = "",
  ...
)

Arguments

file

Name of Sweave source file.

driver

Sweave driver

syntax

Sweave syntax

encoding

Encoding

...

Further arguments passed to the driver's setup function.

Author(s)

David Hajage [email protected]

See Also

Sweave

Examples

## Not run: 
testfile <- system.file("examples", "Org-test-1.nw", package = "ascii")

## enforce par(ask = FALSE)
options(device.ask.default = FALSE)

## create an org file - in the current working directory, getwd():
Org(testfile)
Org(testfile, driver=weaverOrg)

## This can be edited in and exported from Org Mode

## End(Not run)

ascii list generator

Description

ascii list generator

Methods

show.asciidoc( x = .self$x, caption = .self$caption, caption.level = .self$caption.level, list.type = .self$list.type )

print a list with asciidoc markup

show.org( x = .self$x, caption = .self$caption, caption.level = .self$caption.level, list.type = .self$list.type )

print a list with org markup

show.pandoc( x = .self$x, caption = .self$caption, caption.level = .self$caption.level, list.type = .self$list.type )

print a list with pandoc markup

show.rest( x = .self$x, caption = .self$caption, caption.level = .self$caption.level, list.type = .self$list.type )

print a list with rest markup

show.t2t( x = .self$x, caption = .self$caption, caption.level = .self$caption.level, list.type = .self$list.type )

print a list with t2t markup

show.textile( x = .self$x, caption = .self$caption, caption.level = .self$caption.level, list.type = .self$list.type )

print a list with textile markup

Author(s)

David Hajage


ascii mixed generator

Description

ascii mixed generator

Methods

show.asciidoc()

print everything with asciidoc markup

show.org()

print everything with org markup

show.pandoc()

print everything with pandoc markup

show.rest()

print everything with rest markup

show.t2t()

print everything with t2t markup

show.textile()

print everything with textile markup

Author(s)

David Hajage


ascii table generator

Description

ascii table generator

Methods

show.asciidoc( x = .self$x, include.rownames = .self$include.rownames, include.colnames = .self$include.colnames, rownames = .self$rownames, colnames = .self$colnames, format = .self$format, digits = .self$digits, decimal.mark = .self$decimal.mark, na.print = .self$na.print, caption = .self$caption, caption.level = .self$caption.level, width = .self$width, frame = .self$frame, grid = .self$grid, valign = .self$valign, header = .self$header, footer = .self$footer, align = .self$align, col.width = .self$col.width, style = .self$style, lgroup = .self$lgroup, n.lgroup = .self$n.lgroup, lalign = .self$lalign, lvalign = .self$lvalign, lstyle = .self$lstyle, rgroup = .self$rgroup, n.rgroup = .self$n.rgroup, ralign = .self$ralign, rvalign = .self$rvalign, rstyle = .self$rstyle, tgroup = .self$tgroup, n.tgroup = .self$n.tgroup, talign = .self$talign, tvalign = .self$tvalign, tstyle = .self$tstyle, bgroup = .self$bgroup, n.bgroup = .self$n.bgroup, balign = .self$balign, bvalign = .self$bvalign, bstyle = .self$bstyle )

print a table with asciidoc markup

show.org( x = .self$x, include.rownames = .self$include.rownames, include.colnames = .self$include.colnames, rownames = .self$rownames, colnames = .self$colnames, format = .self$format, digits = .self$digits, decimal.mark = .self$decimal.mark, na.print = .self$na.print, caption = .self$caption, caption.level = .self$caption.level, width = .self$width, frame = .self$frame, grid = .self$grid, valign = .self$valign, header = .self$header, footer = .self$footer, align = .self$align, col.width = .self$col.width, style = .self$style, lgroup = .self$lgroup, n.lgroup = .self$n.lgroup, lalign = .self$lalign, lvalign = .self$lvalign, lstyle = .self$lstyle, rgroup = .self$rgroup, n.rgroup = .self$n.rgroup, ralign = .self$ralign, rvalign = .self$rvalign, rstyle = .self$rstyle, tgroup = .self$tgroup, n.tgroup = .self$n.tgroup, talign = .self$talign, tvalign = .self$tvalign, tstyle = .self$tstyle, bgroup = .self$bgroup, n.bgroup = .self$n.bgroup, balign = .self$balign, bvalign = .self$bvalign, bstyle = .self$bstyle )

print a table with org-mode markup

show.pandoc( x = .self$x, include.rownames = .self$include.rownames, include.colnames = .self$include.colnames, rownames = .self$rownames, colnames = .self$colnames, format = .self$format, digits = .self$digits, decimal.mark = .self$decimal.mark, na.print = .self$na.print, caption = .self$caption, caption.level = .self$caption.level, width = .self$width, frame = .self$frame, grid = .self$grid, valign = .self$valign, header = .self$header, footer = .self$footer, align = .self$align, col.width = .self$col.width, style = .self$style, lgroup = .self$lgroup, n.lgroup = .self$n.lgroup, lalign = .self$lalign, lvalign = .self$lvalign, lstyle = .self$lstyle, rgroup = .self$rgroup, n.rgroup = .self$n.rgroup, ralign = .self$ralign, rvalign = .self$rvalign, rstyle = .self$rstyle, tgroup = .self$tgroup, n.tgroup = .self$n.tgroup, talign = .self$talign, tvalign = .self$tvalign, tstyle = .self$tstyle, bgroup = .self$bgroup, n.bgroup = .self$n.bgroup, balign = .self$balign, bvalign = .self$bvalign, bstyle = .self$bstyle )

print a table with pandoc markup

show.rest( x = .self$x, include.rownames = .self$include.rownames, include.colnames = .self$include.colnames, rownames = .self$rownames, colnames = .self$colnames, format = .self$format, digits = .self$digits, decimal.mark = .self$decimal.mark, na.print = .self$na.print, caption = .self$caption, caption.level = .self$caption.level, width = .self$width, frame = .self$frame, grid = .self$grid, valign = .self$valign, header = .self$header, footer = .self$footer, align = .self$align, col.width = .self$col.width, style = .self$style, lgroup = .self$lgroup, n.lgroup = .self$n.lgroup, lalign = .self$lalign, lvalign = .self$lvalign, lstyle = .self$lstyle, rgroup = .self$rgroup, n.rgroup = .self$n.rgroup, ralign = .self$ralign, rvalign = .self$rvalign, rstyle = .self$rstyle, tgroup = .self$tgroup, n.tgroup = .self$n.tgroup, talign = .self$talign, tvalign = .self$tvalign, tstyle = .self$tstyle, bgroup = .self$bgroup, n.bgroup = .self$n.bgroup, balign = .self$balign, bvalign = .self$bvalign, bstyle = .self$bstyle )

print a table with restructuredText markup

show.t2t( x = .self$x, include.rownames = .self$include.rownames, include.colnames = .self$include.colnames, rownames = .self$rownames, colnames = .self$colnames, format = .self$format, digits = .self$digits, decimal.mark = .self$decimal.mark, na.print = .self$na.print, caption = .self$caption, caption.level = .self$caption.level, width = .self$width, frame = .self$frame, grid = .self$grid, valign = .self$valign, header = .self$header, footer = .self$footer, align = .self$align, col.width = .self$col.width, style = .self$style, lgroup = .self$lgroup, n.lgroup = .self$n.lgroup, lalign = .self$lalign, lvalign = .self$lvalign, lstyle = .self$lstyle, rgroup = .self$rgroup, n.rgroup = .self$n.rgroup, ralign = .self$ralign, rvalign = .self$rvalign, rstyle = .self$rstyle, tgroup = .self$tgroup, n.tgroup = .self$n.tgroup, talign = .self$talign, tvalign = .self$tvalign, tstyle = .self$tstyle, bgroup = .self$bgroup, n.bgroup = .self$n.bgroup, balign = .self$balign, bvalign = .self$bvalign, bstyle = .self$bstyle )

print a table with txt2tags markup

show.textile( x = .self$x, include.rownames = .self$include.rownames, include.colnames = .self$include.colnames, rownames = .self$rownames, colnames = .self$colnames, format = .self$format, digits = .self$digits, decimal.mark = .self$decimal.mark, na.print = .self$na.print, caption = .self$caption, caption.level = .self$caption.level, width = .self$width, frame = .self$frame, grid = .self$grid, valign = .self$valign, header = .self$header, footer = .self$footer, align = .self$align, col.width = .self$col.width, style = .self$style, lgroup = .self$lgroup, n.lgroup = .self$n.lgroup, lalign = .self$lalign, lvalign = .self$lvalign, lstyle = .self$lstyle, rgroup = .self$rgroup, n.rgroup = .self$n.rgroup, ralign = .self$ralign, rvalign = .self$rvalign, rstyle = .self$rstyle, tgroup = .self$tgroup, n.tgroup = .self$n.tgroup, talign = .self$talign, tvalign = .self$tvalign, tstyle = .self$tstyle, bgroup = .self$bgroup, n.bgroup = .self$n.bgroup, balign = .self$balign, bvalign = .self$bvalign, bstyle = .self$bstyle )

print a table with textile markup

Author(s)

David Hajage


Cbind two ascii objects

Description

Cbind two ascii objects

Usage

## S3 method for class 'ascii'
cbind(
  ...,
  caption = NULL,
  caption.level = NULL,
  frame = NULL,
  grid = NULL,
  col.width = 1,
  width = 0
)

Arguments

...

ascii objects

caption

see ?ascii

caption.level

see ?ascii

frame

see ?ascii

grid

see ?ascii

col.width

see ?ascii

width

see ?ascii

Details

This function binds cols of two ascii table.

Value

An "asciiCbind" object.

Author(s)

David Hajage


Convert a file with specified backend

Description

Convert a file with specified backend

Usage

convert(
  i,
  d = NULL,
  f = NULL,
  e = NULL,
  O = NULL,
  backend = getOption("asciiBackend"),
  cygwin = FALSE,
  open = FALSE
)

Arguments

i

input file

d

output directory

f

format

e

encoding

O

other options

backend

backend ("asciidoc", "t2t" or "pandoc")

cygwin

use cygwin?

open

open resulting file?

Details

This function convert a file with asciidoc, txt2tags or pandoc backend

Value

Nothing

Author(s)

David Hajage


Report creation

Description

Produce a report

Usage

createreport(
  ...,
  list = NULL,
  file = NULL,
  format = NULL,
  open = TRUE,
  backend = getOption("asciiBackend"),
  encoding = NULL,
  options = NULL,
  cygwin = FALSE,
  title = NULL,
  author = NULL,
  email = NULL,
  date = NULL
)

Arguments

...

R objects (not used if "list" is not NULL)

list

list of R objects

file

name of the output file (without extension)

format

format of the output file

open

open resulting file?

backend

backend

encoding

encoding

options

other options

cygwin

use cygwin?

title

title of the report

author

author of the report

email

email of the author

date

date

Details

Produce a report from a list of R objects. This function can be used directly, or through a Report object (see examples). Report$new() creates a new object, Report$create() produce a report. Exportation options can be specified with Report$nameoftheoption <- option or directly in Report$create(nameoftheoption = option).

Special objects can be used to create sections (see ?section), paragraphs (see ?paragraph), verbatim environment (see ?verbatim and to insert figures (see ?fig) or inline results (see ?sexpr). Helpers exist: Report$addSection(), Report$addParagraph(), Report$addVerbatim(), Report$addFig().

It needs a working installation of asciidoc, a2x tool chain, txt2tags and/or pandoc (NB: markdown2pdf uses pandoc with latex).

Value

Nothing

Author(s)

David Hajage

Examples

## Not run: 
op <- options(asciiType = "asciidoc")
createreport(head(esoph))

r <- Report$new(author = "David Hajage", email = "dhajage at gmail dot com")
r$add(section("First section"))
r$addSection("First subsection", 2)
r$add(paragraph("The data set has", sexpr(nrow(esoph)), " lines. See yourself:"), esoph)
r$addSection("Second subsection: age and alc group", 2)
tab <- with(esoph, table(alcgp, agegp))
r$add(ascii(tab), ascii(summary(tab), format = "nice"))
r$create()
r$format <- "slidy"
r$create()

r$title <- "R report example"
r$author <- "David Hajage"
r$email <- "dhajage at gmail dot com"
options(asciiType = "pandoc")
r$backend <- "pandoc"
r$format <- "odt"
r$create()

r$create(backend = "markdown2pdf", format = "pdf")
options(op)

## End(Not run)

Insert figure

Description

graph can be used with export function to insert an R graphic.

Usage

fig(file = NULL, graph = NULL, format = NULL, ...)

Arguments

file

character string (

graph

a recordedplot, a lattice plot, a ggplot, or an expression producing a plot (optional if the file already exists)

format

jpg, png or pdf (or guessed with the file name)

...

additional arguments (passed to format options)

Value

A fig object

Author(s)

David Hajage


Export R objects

Description

out can be used with export function to insert an R results

Usage

out(x, results = "verbatim")

Arguments

x

an R object

results

if 'verbatim', the output is included in a verbatim environment. If 'ascii', the output is taken to be already proper markup and included as is.

Value

An out object

Author(s)

David Hajage


Create a paragraph

Description

paragraph can be used with export function to add... a paragraph

Usage

paragraph(..., new = TRUE)

Arguments

...

strings composing the paragraph

new

whether to create a new paragraph or to continue a preceding one

Value

A paragraph object.

Author(s)

David Hajage


format p values

Description

format p values

Usage

plim(p, digits = 4)

Arguments

p

p values

digits

number of digits

Value

formated p values

Author(s)

David Hajage


Print an graph object

Description

Print an graph object

Usage

## S3 method for class 'fig'
print(x, backend = getOption("asciiBackend"), ...)

Arguments

x

an graph object

backend

ascii backend

...

not used

Author(s)

David Hajage


Print an out object

Description

Print an out object

Usage

## S3 method for class 'out'
print(x, backend = getOption("asciiBackend"), ...)

Arguments

x

an out object

backend

ascii backend

...

not used

Author(s)

David Hajage


Print a paragraph object

Description

Print a paragraph object

Usage

## S3 method for class 'paragraph'
print(x, ...)

Arguments

x

a paragraph object

...

not used

Author(s)

David Hajage


Print a section object

Description

Print a section object

Usage

## S3 method for class 'section'
print(x, backend = getOption("asciiBackend"), ...)

Arguments

x

a section object

backend

ascii backend

...

not used

Author(s)

David Hajage


Print a sexpr object

Description

Print a sexpr object

Usage

## S3 method for class 'sexpr'
print(x, ...)

Arguments

x

a sexpr object

...

not used

Author(s)

David Hajage


Print a verbatim object

Description

Print a verbatim object

Usage

## S3 method for class 'verbatim'
print(x, backend = getOption("asciiBackend"), ...)

Arguments

x

a verbatim object

backend

ascii backend

...

not used

Author(s)

David Hajage


RtangleAscii

Description

RtangleAscii

Usage

RtangleAscii()

Create a section

Description

section can be used with export function to add... a section

Usage

section(caption, caption.level = 1)

Arguments

caption

a string

caption.level

caption level

Value

A section object.

Author(s)

David Hajage


Insert an inline R result

Description

sexpr can be used with export function to insert an inline R results

Usage

sexpr(x)

Arguments

x

an R results (of length one)

Value

A sexpr object.

Author(s)

David Hajage


Create a verbatim paragraph

Description

verbatim can be used with export function to add a verbatim paragraph

Usage

verbatim(...)

Arguments

...

strings composing the paragraph (line by line)

Value

A verbatim object.

Author(s)

David Hajage