Package: collett 0.1.3

collett: Datasets from "Modelling Survival Data in Medical Research" by Collett

Datasets for the book entitled "Modelling Survival Data in Medical Research" by Collett (2023) <doi:10.1201/9781003282525>. The datasets provide extensive examples of time-to-event data.

Authors:Mark Clements [aut, cre], Enoch Yi-Tung Chen [ctb]

collett_0.1.3.tar.gz
collett_0.1.3.zip(r-4.7)collett_0.1.3.zip(r-4.6)collett_0.1.3.zip(r-4.5)
collett_0.1.3.tgz(r-4.6-any)collett_0.1.3.tgz(r-4.5-any)
collett_0.1.3.tar.gz(r-4.7-any)collett_0.1.3.tar.gz(r-4.6-any)
collett_0.1.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
collett/json (API)

# Install 'collett' in R:
install.packages('collett', repos = c('https://mclements.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mclements/collett/issues

Datasets:
  • active_hepatitis - Chronic active hepatitis
  • bcancer - Prognosis for women with breast cancer
  • bladder - Recurrence of bladder cancer
  • bone_marrow - Bone marrow transplantation
  • bone_marrow_tx - Patient outcome following bone marrow transplantation
  • breast_rfs - Recurrence free survival in breast cancer patients
  • dialysis - Infection in patients on dialysis
  • ducks - Survival of black ducks
  • gcancer - Survival of patients with gastric cancer
  • granulomatous - Chronic granulomatous disease
  • HELP - Health evaluation and linkage to primary care
  • illustration - A numerical illustration
  • IUD - Time to discontinuation of the use of an IUD
  • kidney - Treatment of hypernephroma
  • kidneytx - Comparisons between kidney transplant centres
  • lbrdata0 - Data from a cirrhosis study
  • leukaemia - Bone marrow transplantation in the treatment of leukaemia
  • liver - Survival of liver transplant recipients
  • liver_counting - Data from a cirrhosis study
  • liverbase - Data from a cirrhosis study
  • livertx - Time to death while waiting for a liver transplant
  • lung - Survival of patients registered for a lung transplant
  • mammary - Recurrence of mammary tumours in female rats
  • melanoma - Survival times of patients with melanoma
  • mice - Survival of laboratory mice
  • myeloma - Survival of multiple myeloma patients
  • ovarian - Chemotherapy in ovarian cancer patients
  • prostatic - Comparison of two treatments for prostatic cancer
  • pulmonary - Pulmonary metastasis
  • simdata - Simulated data
  • tamoxifen - Clinical trial of tamoxifen in breast cancer patients
  • tplant - Survival following kidney transplantation
  • ulcer - Recurrence of an ulcer
  • valve - Survival following aortic valve replacement

On CRAN:

Conda:

3.48 score 2 stars 8 scripts 139 downloads 5 exports 4 dependencies

Last updated from:07ad9c1579. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK130
source / vignettesOK138
linux-release-x86_64OK115
macos-release-arm64OK97
macos-oldrel-arm64OK102
windows-develOK124
windows-releaseOK102
windows-oldrelOK94
wasm-releaseOK92

Exports:collett_dataplot_coxph_functionalpredict_coxph_ttpredict_coxph_tvstep_s

Dependencies:latticeMatrixsurvivaltinyplot

Readme and manuals

Help Manual

Help pageTopics
Chronic active hepatitisactive_hepatitis
Prognosis for women with breast cancerbcancer
Recurrence of bladder cancerbladder
Bone marrow transplantationbone_marrow
Patient outcome following bone marrow transplantationbone_marrow_tx
Recurrence free survival in breast cancer patientsbreast_rfs
Datasetscollett_data Datasets
Infection in patients on dialysisdialysis
Survival of black ducksducks
Survival of patients with gastric cancergcancer
Chronic granulomatous diseasegranulomatous
Health evaluation and linkage to primary careHELP
A numerical illustrationillustration
Time to discontinuation of the use of an IUDIUD
Treatment of hypernephromakidney
Comparisons between kidney transplant centreskidneytx
Data from a cirrhosis study (lbr data)lbrdata0
Bone marrow transplantation in the treatment of leukaemialeukaemia
Survival of liver transplant recipientsliver
Data from a cirrhosis study (in counting process format)liver_counting
Data from a cirrhosis study (baseline)liverbase
Time to death while waiting for a liver transplantlivertx
Survival of patients registered for a lung transplantlung
Recurrence of mammary tumours in female ratsmammary
Survival times of patients with melanomamelanoma
Survival of laboratory micemice
Survival of multiple myeloma patientsmyeloma
Chemotherapy in ovarian cancer patientsovarian
Comparison of two treatments for prostatic cancerprostatic
Pulmonary metastasispulmonary
Simulated datasimdata
Utilitiesas.data.frame.summary.survfit as.data.frame.survfit plot_coxph_functional predict_coxph_tt predict_coxph_tv step_s
Clinical trial of tamoxifen in breast cancer patientstamoxifen
Survival following kidney transplantationtplant
Recurrence of an ulcerulcer
Survival following aortic valve replacementvalve